Oh.
Um...officially switching my suggestion to making the message you get when unpublishing a little clearer then:
Are you sure you want to unpublish Shadow of a Bloody Moon? The following items will be deleted upon unpublish:
1 Saved Game
4 Ratings
Though of course now I notice that it doesn't specifically list comments, now that I've got one--losing those was my main concern, so I feel better about the whole thing. :)
And as long as I'm just throwing stuff out here, some sort of 'writer's workshop' mode that would let selected people view a story and anything that's going on behind the scenes with it without actually giving them the power to edit would be awesome.
...why do all the good CYOA sites have to be abandoned by their makers? :(